Information for 11-GGTCTAAATGGG (Motif 23)


Reverse Opposite:

p-value:1e-5
log p-value:-1.348e+01
Information Content per bp:1.923
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.07%
Number of Background Sequences with motif107.9
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets1016.6 +/- 489.7bp
Average Position of motif in Background887.1 +/- 702.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGTCTAAATGGG
GNCTATAAAAGG-

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGTCTAAATGGG----
-GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGTCTAAATGGG----
-GTATAAAAGGCGGGG

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGTCTAAATGGG----
NNTNNACAATGGGANNN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGTCTAAATGGG
---CTAATKGV-

PB0090.1_Zbtb12_1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGTCTAAATGGG
CTAAGGTTCTAGATCAC

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGTCTAAATGGG---
ACNNCTAATTAGNNNN

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGTCTAAATGGG-
---GTTAATGGCC

MA0095.2_YY1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGTCTAAATGGG---
---CAAGATGGCGGC

PH0127.1_Nobox/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGTCTAAATGGG----
CGCGCTAATTAGGTATC