Information for 14-GAACAMSAAC (Motif 25)


Reverse Opposite:

p-value:1e-5
log p-value:-1.209e+01
Information Content per bp:1.693
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif3523.4
Percentage of Background Sequences with motif7.69%
Average Position of motif in Targets789.6 +/- 491.1bp
Average Position of motif in Background975.7 +/- 653.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAACAMSAAC----
CAAACAACAACACCT

PB0062.1_Sox12_1/Jaspar

Match Rank:2
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GAACAMSAAC
NTTNAGAACAATTA-

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAACAMSAAC--
ATGTCACAACAACAC

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAACAMSAAC--
TTTAGAACAATAAAAT

PB0090.1_Zbtb12_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAACAMSAAC-----
NNGATCTAGAACCTNNN

PB0093.1_Zfp105_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAACAMSAAC--
AACAAACAACAAGAG

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAACAMSAAC-
GGACCACCCACG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GAACAMSAAC
CCAGGAACAG----

POL007.1_BREd/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAACAMSAAC
---NANANAC

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GAACAMSAAC--
NNNTAACAATTATAN