Information for 17-ATMKATCTATAT (Motif 28)


Reverse Opposite:

p-value:1e-3
log p-value:-7.496e+00
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.63%
Number of Background Sequences with motif200.4
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets530.6 +/- 424.1bp
Average Position of motif in Background929.3 +/- 673.7bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)3.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0080.1_Tbp_1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ATMKATCTATAT---
NANTTATATATAANGN

PB0198.1_Zfp128_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATMKATCTATAT-
TGTATATATATACC

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATMKATCTATAT
--DGATCRATAN

PB0163.1_Six6_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATMKATCTATAT-----
ANNNGGATATATCCNNN

MA0033.1_FOXL1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ATMKATCTATAT
---TATACATA-

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:ATMKATCTATAT--
----ATGMATATDC

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATMKATCTATAT---
TCACCCATCAATAAACA

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATMKATCTATAT---
-NNTNNCAATATTAG

MA0070.1_PBX1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATMKATCTATAT
CCATCAATCAAA--

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ATMKATCTATAT
NNNNNNCTTTTATAN