Information for 25-GTAGGTGGGTCA (Motif 31)


Reverse Opposite:

p-value:1e-1
log p-value:-3.374e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets123.0 +/- 68.0bp
Average Position of motif in Background846.4 +/- 497.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)7.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0072.1_RORA_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTAGGTGGGTCA-
TATAAGTAGGTCAA

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GTAGGTGGGTCA
--AAYTAGGTCA

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTAGGTGGGTCA----
AGAGCGGGGTCAAGTA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GTAGGTGGGTCA
------AGGTCA

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTAGGTGGGTCA----
CGCGCCGGGTCACGTA

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTAGGTGGGTCA
GTAGGTCACTGGGTCA

MA0477.1_FOSL1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTAGGTGGGTCA--
---GGTGACTCATG

MA0099.2_JUN::FOS/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GTAGGTGGGTCA
-----TGAGTCA

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTAGGTGGGTCA-
---GATGAGTCAT

MA0490.1_JUNB/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTAGGTGGGTCA-
--GGATGACTCAT