Information for 2-GAGACAGTATTG (Motif 4)


Reverse Opposite:

p-value:1e-11
log p-value:-2.720e+01
Information Content per bp:1.923
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif3.51%
Number of Background Sequences with motif26.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets900.6 +/- 647.6bp
Average Position of motif in Background912.3 +/- 599.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGACAGTATTG
-GGTAAGTA---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGACAGTATTG
CCAGACAG-----

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GAGACAGTATTG
GAAAGTGAAAGT----

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------GAGACAGTATTG
CTACTTGGATACGGAAT--

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGACAGTATTG
--CACAGN----

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGACAGTATTG
TGAGTCAGCA---

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GAGACAGTATTG-----
---CTAATATTGCTAAA

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------GAGACAGTATTG
CAAATCCAGACATCACA-

MA0100.2_Myb/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGACAGTATTG
-TGGCAGTTGN-

MA0078.1_Sox17/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GAGACAGTATTG
--GACAATGNN-