Information for 4-TAGGAATTCCCC (Motif 5)


Reverse Opposite:

p-value:1e-11
log p-value:-2.596e+01
Information Content per bp:1.881
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif4.82%
Number of Background Sequences with motif99.4
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets944.1 +/- 582.8bp
Average Position of motif in Background942.8 +/- 700.3bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:TAGGAATTCCCC-
-GGGAAATCCCCN

MA0105.3_NFKB1/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:TAGGAATTCCCC
-GGGAATTTCCC

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TAGGAATTCCCC
--GGAAATCCCC

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TAGGAATTCCCC-
-GGGGATTCCCCC

MA0101.1_REL/Jaspar

Match Rank:5
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TAGGAATTCCCC
--GGAAANCCCC

MA0107.1_RELA/Jaspar

Match Rank:6
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TAGGAATTCCCC
--GGAAATTCCC

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TAGGAATTCCCC
--GGAAATTCCC

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TAGGAATTCCCC
NCTGGAATGC---

MA0056.1_MZF1_1-4/Jaspar

Match Rank:9
Score:0.66
Offset:7
Orientation:reverse strand
Alignment:TAGGAATTCCCC-
-------TCCCCA

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TAGGAATTCCCC-
---RCATTCCWGG