Information for 2-GCGATTTA (Motif 6)


Reverse Opposite:

p-value:1e-10
log p-value:-2.358e+01
Information Content per bp:1.803
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif32.02%
Number of Background Sequences with motif6805.6
Percentage of Background Sequences with motif14.86%
Average Position of motif in Targets957.4 +/- 545.3bp
Average Position of motif in Background981.7 +/- 691.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GCGATTTA
CNGTGATTTN

MA0485.1_Hoxc9/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCGATTTA-----
NTGATTTATGGCC

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCGATTTA-----
-TGATTTATGGCC

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCGATTTA-----
-TGATTTATGGCC

MA0483.1_Gfi1b/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCGATTTA
TGCTGTGATTT-

MA0594.1_Hoxa9/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCGATTTA----
-TGATTTATGGC

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCGATTTA----
KCTATTTTTRGH

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCGATTTA
GCAGTGATTT-

MA0052.2_MEF2A/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCGATTTA-----
NNGCTATTTTTAGCN

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCGATTTA-----
NNANTGATTGATNNNN