Information for 5-CAGGAGCCTAGA (Motif 7)


Reverse Opposite:

p-value:1e-10
log p-value:-2.357e+01
Information Content per bp:1.866
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif162.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets720.3 +/- 556.7bp
Average Position of motif in Background955.8 +/- 587.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGGAGCCTAGA
ATGTACAGTAGCAAAG-

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CAGGAGCCTAGA-
NTNNNAGGAGTCTCNTN

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAGGAGCCTAGA
ATTTACAGTAGCAAAA-

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGGAGCCTAGA
ANCAGGATGT----

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGGAGCCTAGA
ATCCACAGGTGCGAAAA

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGGAGCCTAGA
-CGGAGC-----

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGGAGCCTAGA
NNCAGGTGNN----

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CAGGAGCCTAGA
ATTTCCCAGVAKSCY---

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CAGGAGCCTAGA
CACAGN--------

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CAGGAGCCTAGA
NNVVCAGCTGBN----