Information for 4-CGGGCCAATN (Motif 8)


Reverse Opposite:

p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.520
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2476.6
Percentage of Background Sequences with motif5.41%
Average Position of motif in Targets1235.5 +/- 568.5bp
Average Position of motif in Background993.0 +/- 632.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CGGGCCAATN--
--AGCCAATCGG

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGGGCCAATN--
AAATGGACCAATCAG

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGGGCCAATN
TTCGCGCGAAAA

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGGGCCAATN-
ACTAGCCAATCA

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGGCCAATN
GGCGGGAAAH

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGGGCCAATN
--TGCCAA--

PB0112.1_E2F2_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGGGCCAATN--
CCTTCGGCGCCAAAAGG

PB0143.1_Klf7_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGGGCCAATN---
NNNTNGGGCGTATNNTN

MA0060.2_NFYA/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGGGCCAATN--------
TGGACCAATCAGCACTCT

PH0127.1_Nobox/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGGGCCAATN-------
CGCGCTAATTAGGTATC