| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Sp1(Zf)/Promoter/Homer | 1e-5 | -1.369e+01 | 0.0003 | 106.0 | 46.49% | 14330.7 | 31.29% | motif file (matrix) |
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| 2 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.094e+00 | 0.0403 | 107.0 | 46.93% | 16331.9 | 35.66% | motif file (matrix) |
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| 3 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -6.801e+00 | 0.0979 | 200.0 | 87.72% | 36531.3 | 79.77% | motif file (matrix) |
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| 4 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-2 | -6.752e+00 | 0.0979 | 60.0 | 26.32% | 8244.9 | 18.00% | motif file (matrix) |
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| 5 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.654e+00 | 0.0979 | 182.0 | 79.82% | 32429.4 | 70.81% | motif file (matrix) |
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| 6 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-2 | -4.808e+00 | 0.3592 | 73.0 | 32.02% | 11345.4 | 24.77% | motif file (matrix) |
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| 7 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.725e+00 | 0.3592 | 117.0 | 51.32% | 19823.8 | 43.29% | motif file (matrix) |
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| 8 |  | REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-2 | -4.684e+00 | 0.3592 | 6.0 | 2.63% | 355.7 | 0.78% | motif file (matrix) |
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