Information for 9-TCTACGTGCCTG (Motif 13)


Reverse Opposite:

p-value:1e-7
log p-value:-1.809e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets278.2 +/- 67.3bp
Average Position of motif in Background315.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCTACGTGCCTG
--TACGTGCV--

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TCTACGTGCCTG
GGGTACGTGC---

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCTACGTGCCTG
-RTACGTGC---

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCTACGTGCCTG
-NNACTTGCCTT

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCTACGTGCCTG
-GGACGTGC---

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCTACGTGCCTG
--TACTNNNN--

PB0027.1_Gmeb1_1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCTACGTGCCTG--
GAGTGTACGTAAGATGG

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TCTACGTGCCTG
KCCACGTGAC--

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCTACGTGCCTG-----
NNTNCGCACCTGTNGAN

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCTACGTGCCTG
-CCACGTGGNN-