| p-value: | 1e-7 |
| log p-value: | -1.766e+01 |
| Information Content per bp: | 1.899 |
| Number of Target Sequences with motif | 40.0 |
| Percentage of Target Sequences with motif | 0.61% |
| Number of Background Sequences with motif | 96.6 |
| Percentage of Background Sequences with motif | 0.22% |
| Average Position of motif in Targets | 226.3 +/- 110.0bp |
| Average Position of motif in Background | 202.0 +/- 105.7bp |
| Strand Bias (log2 ratio + to - strand density) | 0.8 |
| Multiplicity (# of sites on avg that occur together) | 2.33 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer
| Match Rank: | 1 |
| Score: | 0.72
| | Offset: | -2
| | Orientation: | forward strand |
| Alignment: | --CATCCATCCA
GYCATCMATCAT |
|
|
|
PB0028.1_Hbp1_1/Jaspar
| Match Rank: | 2 |
| Score: | 0.70
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --CATCCATCCA----
NNCATTCATTCATNNN |
|
|
|
MA0070.1_PBX1/Jaspar
| Match Rank: | 3 |
| Score: | 0.69
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -CATCCATCCA-
CCATCAATCAAA |
|
|
|
PH0134.1_Pbx1/Jaspar
| Match Rank: | 4 |
| Score: | 0.67
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -CATCCATCCA------
TCACCCATCAATAAACA |
|
|
|
PB0170.1_Sox17_2/Jaspar
| Match Rank: | 5 |
| Score: | 0.64
| | Offset: | -5
| | Orientation: | forward strand |
| Alignment: | -----CATCCATCCA--
GACCACATTCATACAAT |
|
|
|
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer
| Match Rank: | 6 |
| Score: | 0.62
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -CATCCATCCA
TCATCAATCA- |
|
|
|
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer
| Match Rank: | 7 |
| Score: | 0.60
| | Offset: | -3
| | Orientation: | reverse strand |
| Alignment: | ---CATCCATCCA
RGCCATYAATCA- |
|
|
|
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer
| Match Rank: | 8 |
| Score: | 0.59
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -CATCCATCCA
NTATYGATCH- |
|
|
|
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer
| Match Rank: | 9 |
| Score: | 0.59
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -CATCCATCCA----
SCAGYCADGCATGAC |
|
|
|
MA0594.1_Hoxa9/Jaspar
| Match Rank: | 10 |
| Score: | 0.59
| | Offset: | -2
| | Orientation: | forward strand |
| Alignment: | --CATCCATCCA
GCCATAAATCA- |
|
|
|
