Information for 8-GGCCGAGCCT (Motif 17)


Reverse Opposite:

p-value:1e-7
log p-value:-1.660e+01
Information Content per bp:1.967
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets149.5 +/- 82.3bp
Average Position of motif in Background160.1 +/- 84.6bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGCCGAGCCT--
CAGGCCNNGGCCNN

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGCCGAGCCT---
NNGGCCACGCCTTTN

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCCGAGCCT
AGGCCTAG---

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGCCGAGCCT
GGGGGCGGGGCC-

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGCCGAGCCT
----CAGCC-

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCCGAGCCT
-AGCGCGCC-

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GGCCGAGCCT
AGGGGGCGGGGCTG

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCCGAGCCT
--CGGAGC--

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCCGAGCCT
AGGCCTNG---

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCCGAGCCT-
ATAAGGGCGCGCGAT