Information for 8-CTGAGTAG (Motif 19)


Reverse Opposite:

p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.879
Number of Target Sequences with motif757.0
Percentage of Target Sequences with motif11.59%
Number of Background Sequences with motif4243.4
Percentage of Background Sequences with motif9.75%
Average Position of motif in Targets198.6 +/- 115.7bp
Average Position of motif in Background198.5 +/- 115.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGAGTAG
GGTAAGTA-

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGAGTAG-
TTAAGTGGA

PH0098.1_Lhx8/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTGAGTAG----
CACCGCTAATTAGNNGN

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGAGTAG
-TAAGTAT

PH0034.1_Gbx2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTGAGTAG-----
AGCGCTAATTAGCGATT

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGAGTAG
GCTGTG---

PH0097.1_Lhx6_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CTGAGTAG----
NNNCGCTAATTAGNNGA

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGAGTAG-----
ANCGCTAATTAGCGGTN

PH0031.1_Evx1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTGAGTAG----
NNNCACTAATTAGTNNT

PH0027.1_Emx2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTGAGTAG-----
ACCACTAATTAGTGGAC