Information for 12-CAGCCCAGCCCA (Motif 20)


Reverse Opposite:

p-value:1e-6
log p-value:-1.389e+01
Information Content per bp:1.813
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif120.6
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets182.9 +/- 110.4bp
Average Position of motif in Background180.6 +/- 109.8bp
Strand Bias (log2 ratio + to - strand density)-1.9
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGCCCAGCCCA--
NAGCCCCGCCCCCN

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGCCCAGCCCA-
-GGCCCCGCCCCC

MA0039.2_Klf4/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAGCCCAGCCCA
--GCCCCACCCA

MA0599.1_KLF5/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGCCCAGCCCA
--GCCCCGCCCC

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGCCCAGCCCA
--GCCMCRCCCH

PB0039.1_Klf7_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGCCCAGCCCA---
TCGACCCCGCCCCTAT

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCCAGCCCA
AGCAACAGCCGCACC--

MA0079.3_SP1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGCCCAGCCCA-
--GCCCCGCCCCC

MA0516.1_SP2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGCCCAGCCCA-----
--GCCCCGCCCCCTCCC

MA0596.1_SREBF2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCCAGCCCA
ATCACCCCAT----