Information for 13-GAGAGWGTGA (Motif 23)


Reverse Opposite:

p-value:1e-5
log p-value:-1.332e+01
Information Content per bp:1.754
Number of Target Sequences with motif512.0
Percentage of Target Sequences with motif7.84%
Number of Background Sequences with motif2778.2
Percentage of Background Sequences with motif6.38%
Average Position of motif in Targets196.3 +/- 109.1bp
Average Position of motif in Background200.6 +/- 115.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAGAGWGTGA--
--AGGTGTGAAM

PB0013.1_Eomes_1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGAGWGTGA-----
GAAAAGGTGTGAAAATT

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGAGWGTGA-
-ATGGGGTGAT

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGWGTGA
NNNACCGAGAGTNNN-

MA0051.1_IRF2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGAGWGTGA-------
GGAAAGCGAAACCAAAAC

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAGAGWGTGA--
GAAAGTGAAAGT

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGAGWGTGA--
--AGGTGTTAAT

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGAGWGTGA--
GAAAGTGAAAGT

MA0508.1_PRDM1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGAGWGTGA----
AGAAAGTGAAAGTGA

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGAGWGTGA
--AGGTGTCA