Information for 15-AGACGGAGGGGA (Motif 25)


Reverse Opposite:

p-value:1e-5
log p-value:-1.263e+01
Information Content per bp:1.910
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets191.9 +/- 123.4bp
Average Position of motif in Background116.3 +/- 114.6bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)2.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AGACGGAGGGGA
------TGGGGA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGAGGGGA
CCAGACAG------

MA0057.1_MZF1_5-13/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGACGGAGGGGA--
----GGAGGGGGAA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGAGGGGA
CCAGACRSVB----

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGACGGAGGGGA
AAAACAAAGG---

PB0107.1_Ascl2_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGACGGAGGGGA---
NATNGGGNGGGGANAN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGAGGGGA
BCAGACWA------

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AGACGGAGGGGA---
---CGGAAGTGAAAC

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------AGACGGAGGGGA
CAAATCCAGACATCACA--

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----AGACGGAGGGGA
AAACAGACAAAGGAAT