Information for 10-TCATTAAG (Motif 26)


Reverse Opposite:

p-value:1e-4
log p-value:-1.109e+01
Information Content per bp:1.953
Number of Target Sequences with motif220.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif1095.5
Percentage of Background Sequences with motif2.52%
Average Position of motif in Targets194.7 +/- 107.5bp
Average Position of motif in Background192.8 +/- 111.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TCATTAAG
YCATTAMC

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----TCATTAAG---
GGAGGTCATTAATTAT

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------TCATTAAG---
NNNACCTCATTATCNTN

PH0150.1_Pou4f3/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TCATTAAG----
GACNTCATTAATAANN

PH0152.1_Pou6f1_2/Jaspar

Match Rank:5
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TCATTAAG---
GCAACCTCATTATNNNN

PH0175.1_Vax2/Jaspar

Match Rank:6
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------TCATTAAG--
GTGCACTAATTAAGAC

PH0143.1_Pou2f1/Jaspar

Match Rank:7
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------TCATTAAG--
ATATATTAATTAAGTA

MA0151.1_ARID3A/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCATTAAG
--ATTAAA

PB0176.1_Sox5_2/Jaspar

Match Rank:9
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TCATTAAG--
TATCATAATTAAGGA

PH0120.1_Nkx6-3/Jaspar

Match Rank:10
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TCATTAAG----
CNNANTAATTAATTNNC