Information for 11-GTACGCGA (Motif 27)


Reverse Opposite:

p-value:1e-4
log p-value:-1.106e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets169.0 +/- 145.4bp
Average Position of motif in Background256.8 +/- 46.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0094.1_Zfp128_1/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----GTACGCGA----
TTNGGGTACGCCNNANN

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTACGCGA
GGGTACGTGC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTACGCGA-
-TACGTGCV

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTACGCGA
RTACGTGC

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GTACGCGA
GGTAAGTA-----

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GTACGCGA---
TTCNAAGTACTTNNNNN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTACGCGA
-CACGCA-

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTACGCGA
GGACGTGC

PB0027.1_Gmeb1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTACGCGA-----
GAGTGTACGTAAGATGG

PB0179.1_Sp100_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GTACGCGA----
NNTTTANNCGACGNA