Information for 17-CCTAACCCTAAC (Motif 28)


Reverse Opposite:

p-value:1e-4
log p-value:-1.089e+01
Information Content per bp:1.984
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets242.2 +/- 78.6bp
Average Position of motif in Background223.2 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)3.6
Multiplicity (# of sites on avg that occur together)10.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTAACCCTAAC
GCTAATCC----

PH0025.1_Dmbx1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTAACCCTAAC--
NNNATTAATCCGNTTNA

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCTAACCCTAAC
-YTAATCCY---

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTAACCCTAAC
NYTAATCCYB--

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTAACCCTAAC
--TAATCCCN--

MA0057.1_MZF1_5-13/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTAACCCTAAC
-TTCCCCCTAC-

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTAACCCTAAC----
-CAAACAACAACACCT

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCTAACCCTAAC
GGCCACACCCAN--

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTAACCCTAAC--
NNTAATCCNGNCNN

MA0467.1_Crx/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTAACCCTAAC
-CTAATCCTCTT