Information for 18-CAGGTCGTGAGA (Motif 29)


Reverse Opposite:

p-value:1e-4
log p-value:-1.005e+01
Information Content per bp:1.849
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets243.4 +/- 82.6bp
Average Position of motif in Background388.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.86
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCGTGAGA
ACAGGAAGTG---

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTCGTGAGA
NNCAGGTGNN----

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCGTGAGA
ACAGGATGTGGT-

MA0098.2_Ets1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CAGGTCGTGAGA
NNNACAGGAAGTGGN-

MA0475.1_FLI1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCGTGAGA
ACAGGAAGTGG--

MA0473.1_ELF1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAGGTCGTGAGA
GAACCAGGAAGTG---

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCGTGAGA
ACAGGAAGTG---

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAGGTCGTGAGA---
---GTGGCGTGACNG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CAGGTCGTGAGA---
-----CSTGGGAAAD

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAGGTCGTGAGA-
---ATGGGGTGAT