Information for 2-ACACACACACAC (Motif 3)


Reverse Opposite:

p-value:1e-11
log p-value:-2.573e+01
Information Content per bp:1.737
Number of Target Sequences with motif217.0
Percentage of Target Sequences with motif3.32%
Number of Background Sequences with motif884.3
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets207.5 +/- 112.2bp
Average Position of motif in Background195.6 +/- 120.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0472.1_EGR2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ACACACACACAC
CCCCCGCCCACGCAC

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACACACACACAC
AGCGGCACACACGCAA

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ACACACACACAC
-CRCCCACGCA-

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ACACACACACAC-
-YCCGCCCACGCN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACACACACACAC
-CACGCA-----

PB0151.1_Myf6_2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ACACACACACAC-
AGCAACAGCCGCACC

MA0464.1_Bhlhe40/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACACACACACAC
-CTCACGTGCAC

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:ACACACACACAC------
--CGAAGCACACAAAATA

MA0042.1_FOXI1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:ACACACACACAC
AAACAAACANNC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ACACACACACAC
TBGCACGCAA--