Information for 12-CGTTATKA (Motif 31)


Reverse Opposite:

p-value:1e-4
log p-value:-9.595e+00
Information Content per bp:1.859
Number of Target Sequences with motif164.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif800.4
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets203.5 +/- 114.2bp
Average Position of motif in Background194.2 +/- 108.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CGTTATKA---
GTNTTGTTGTGANNT

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CGTTATKA----
NNNTGTTGTTGTTNG

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGTTATKA-------
CCGTATTATAAACAA

PB0119.1_Foxa2_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGTTATKA--
NCNTTTGTTATTTNN

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGTTATKA
YSTTATCT

PB0022.1_Gata5_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CGTTATKA-----
NTNTTCTTATCAGTNTN

PB0194.1_Zbtb12_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGTTATKA-----
AGNGTTCTAATGANN

PB0045.1_Myb_1/Jaspar

Match Rank:8
Score:0.62
Offset:-8
Orientation:forward strand
Alignment:--------CGTTATKA-
ATGGAAACCGTTATTTT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGTTATKA-
NTTTTATGAC

PH0061.1_Hoxb6/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGTTATKA------
NNNGTAATTACNNATA