Information for 18-CGGCGGCCGC (Motif 34)


Reverse Opposite:

p-value:1e-2
log p-value:-6.798e+00
Information Content per bp:1.531
Number of Target Sequences with motif406.0
Percentage of Target Sequences with motif6.22%
Number of Background Sequences with motif2326.0
Percentage of Background Sequences with motif5.34%
Average Position of motif in Targets198.4 +/- 114.5bp
Average Position of motif in Background199.6 +/- 103.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGGCGGCCGC
-GGCGCGCT-

PB0010.1_Egr1_1/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGGCCGC
ANTGCGGGGGCGGN

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGGCCGC--
NNNGGGGCGCCCCCNN

MA0162.2_EGR1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGGCCGC--
GGCGGGGGCGGGGG

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGGCGGCCGC-
NNAGCAGCTGCT

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CGGCGGCCGC
CAAGATGGCGGC---

MA0131.1_HINFP/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CGGCGGCCGC--
--GCGGACGTTN

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGGCGGCCGC-----
CTCAGCAGCTGCTACTG

MA0146.2_Zfx/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CGGCGGCCGC
GGGGCCGAGGCCTG

MA0117.1_Mafb/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CGGCGGCCGC
NCGTCAGC---