Information for 19-ACAGCCTGGA (Motif 35)


Reverse Opposite:

p-value:1e-2
log p-value:-6.573e+00
Information Content per bp:1.979
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif66.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets193.8 +/- 113.6bp
Average Position of motif in Background218.6 +/- 110.4bp
Strand Bias (log2 ratio + to - strand density)2.4
Multiplicity (# of sites on avg that occur together)2.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCCTGGA
CACAGN-----

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACAGCCTGGA
ACATCCTGNT

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACAGCCTGGA
-CAGCC----

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ACAGCCTGGA-
GAGCACAGCAGGACA

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACAGCCTGGA-
CACAGCAGGGGG

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ACAGCCTGGA-
CCACACAGCAGGAGA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACAGCCTGGA
-CTGTCTGG-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ACAGCCTGGA
BCAGACWA--

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ACAGCCTGGA--
GATAACATCCTAGTAG

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ACAGCCTGGA-
CCACACAGCAGGAGA