Information for 22-TCATGCATGATA (Motif 36)


Reverse Opposite:

p-value:1e-2
log p-value:-5.922e+00
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets308.3 +/- 72.2bp
Average Position of motif in Background200.5 +/- 51.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCATGCATGATA--
AAAATATGCATAATAAA

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCATGCATGATA--
--ATGCATAATTCA

MA0069.1_Pax6/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCATGCATGATA
AANTCATGCGTGAA-

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCATGCATGATA--
ACATTCATGACACG

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCATGCATGATA
GYCATCMATCAT-

MA0466.1_CEBPB/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCATGCATGATA
TATTGCACAAT-

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCATGCATGATA
GTCATN-------

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCATGCATGATA
-ATTGCATCAK-

PB0028.1_Hbp1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TCATGCATGATA
NNCATTCATTCATNNN-

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCATGCATGATA
-ATTGCATCAT-