Information for 3-ATGAGCTCTT (Motif 5)


Reverse Opposite:

p-value:1e-10
log p-value:-2.474e+01
Information Content per bp:1.831
Number of Target Sequences with motif120.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif409.8
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets203.7 +/- 118.8bp
Average Position of motif in Background189.0 +/- 113.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGCTCTT----
NNNNTGAGCACTGTNNG

MA0492.1_JUND_(var.2)/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATGAGCTCTT----
NATGACATCATCNNN

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGAGCTCTT--
ATGACGTCATCN

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATGAGCTCTT---
TGTCGTGACCCCTTAAT

MA0512.1_Rxra/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATGAGCTCTT
NCTGACCTTTG

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATGAGCTCTT---
NNNNTTGACCCCTNNNN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGCTCTT---
NNNNTGACCTTTNNNN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------ATGAGCTCTT
GACGATAATGAGCTTGC

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGCTCTT---
NNNGTGACCTTTGNNN

MA0488.1_JUN/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATGAGCTCTT---
ATGACATCATCNN