Information for 4-CCGGGGTTCA (Motif 6)


Reverse Opposite:

p-value:1e-9
log p-value:-2.230e+01
Information Content per bp:1.646
Number of Target Sequences with motif1699.0
Percentage of Target Sequences with motif26.01%
Number of Background Sequences with motif9891.2
Percentage of Background Sequences with motif22.72%
Average Position of motif in Targets197.3 +/- 113.1bp
Average Position of motif in Background200.4 +/- 115.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGGGGTTCA-----
CTCCAGGGGTCAATTGA

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCGGGGTTCA-----
NTNNNGGGGTCANGNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGGGGTTCA-----
GGCGAGGGGTCAAGGGC

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCGGGGTTCA----
CGCGCCGGGTCACGTA

PB0156.1_Plagl1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCGGGGTTCA----
GCTGGGGGGTACCCCTT

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCGGGGTTCA--
--TGGTTTCAGT

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CCGGGGTTCA
NCCCCCCCGGGGGGN-

PB0102.1_Zic2_1/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CCGGGGTTCA
ACCCCCCCGGGGGGN-

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCGGGGTTCA--
--CGGTTTCAAA

PB0025.1_Glis2_1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCGGGGTTCA---
NTNTGGGGGGTCNNNA