Information for 5-ACACTCGAGT (Motif 8)


Reverse Opposite:

p-value:1e-9
log p-value:-2.129e+01
Information Content per bp:1.844
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif71.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets200.6 +/- 124.4bp
Average Position of motif in Background206.2 +/- 109.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ACACTCGAGT
RSCACTYRAG-

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACACTCGAGT
AGCCACTCAAG-

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ACACTCGAGT
AASCACTCAA--

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACACTCGAGT---
ATAACCACTTGAAAATT

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACACTCGAGT
NCCACTTAN--

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ACACTCGAGT--
TAAGCCACTTGAAATT

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ACACTCGAGT--
TAAGCCACTTGAAATT

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ACACTCGAGT
-CACGCA---

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----ACACTCGAGT--
TAAGCCACTTGAATTT

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ACACTCGAGT
RCATTCCWGG