Information for 5-GCATCTGACAGC (Motif 9)


Reverse Opposite:

p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.953
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets216.2 +/- 112.7bp
Average Position of motif in Background228.3 +/- 111.8bp
Strand Bias (log2 ratio + to - strand density)3.8
Multiplicity (# of sites on avg that occur together)3.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCATCTGACAGC-
NNNTGAGTGACAGCT

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCATCTGACAGC
--VGCTGWCAVB

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCATCTGACAGC-----
GATATTGACAGCTGCGT

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCATCTGACAGC-----
-GTATTGACAGCTNNTT

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCATCTGACAGC-----
-NNATTGACAGGTGCTT

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCATCTGACAGC-----
-NTATTGACAGCTNNTT

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCATCTGACAGC
RTCATGTGAC---

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCATCTGACAGC
NVCAGCTGBBNN-

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GCATCTGACAGC
------CACAGN

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCATCTGACAGC-----
-NTATTGACAGGTNNTN