Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6526)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43371)	% of Background Sequences with Motif
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.109e+00	0.2159	62.0	0.95%	268.9	0.62%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-5.304e+00	0.6565	595.0	9.11%	3577.3	8.22%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.273e+00	0.6565	63.0	0.96%	297.2	0.68%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.262e+00	0.6565	66.0	1.01%	314.4	0.72%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-4.988e+00	0.6565	2379.0	36.43%	15222.7	34.96%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.154e+00	0.6912	410.0	6.28%	2459.4	5.65%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.997e+00	0.6928	222.0	3.40%	1283.4	2.95%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.772e+00	0.7590	189.0	2.89%	1086.4	2.50%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.761e+00	0.7590	408.0	6.25%	2466.6	5.66%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.582e+00	0.7590	103.0	1.58%	564.0	1.30%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.428e+00	0.7792	2616.0	40.06%	16953.0	38.93%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.411e+00	0.7792	490.0	7.50%	3010.7	6.91%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.347e+00	0.7792	2590.0	39.66%	16789.9	38.56%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-3.347e+00	0.7792	36.0	0.55%	173.8	0.40%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.084e+00	0.8057	982.0	15.04%	6224.5	14.30%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.070e+00	0.8057	772.0	11.82%	4857.5	11.16%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.034e+00	0.8057	3695.0	56.58%	24186.9	55.55%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.934e+00	0.8057	1226.0	18.77%	7835.4	18.00%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.802e+00	0.8429	494.0	7.56%	3075.8	7.06%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.798e+00	0.8429	1752.0	26.83%	11311.1	25.98%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.711e+00	0.8429	1303.0	19.95%	8364.0	19.21%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.637e+00	0.8587	1026.0	15.71%	6554.1	15.05%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-2.628e+00	0.8587	1134.0	17.36%	7263.4	16.68%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.625e+00	0.8587	843.0	12.91%	5358.3	12.31%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.582e+00	0.8587	1660.0	25.42%	10730.8	24.64%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.490e+00	0.8587	252.0	3.86%	1538.3	3.53%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.490e+00	0.8587	447.0	6.84%	2793.8	6.42%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.408e+00	0.8587	92.0	1.41%	530.4	1.22%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.379e+00	0.8587	359.0	5.50%	2232.5	5.13%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.377e+00	0.8587	92.0	1.41%	531.3	1.22%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.377e+00	0.8587	92.0	1.41%	531.3	1.22%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.288e+00	0.8587	833.0	12.75%	5325.2	12.23%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.277e+00	0.8587	208.0	3.18%	1268.4	2.91%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.130e+00	0.9226	83.0	1.27%	483.5	1.11%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.044e+00	0.9768	719.0	11.01%	4603.4	10.57%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.021e+00	0.9768	2147.0	32.87%	14030.5	32.22%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.965e+00	0.9998	347.0	5.31%	2183.9	5.02%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.958e+00	0.9998	54.0	0.83%	308.1	0.71%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.946e+00	0.9998	801.0	12.26%	5151.8	11.83%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.935e+00	0.9998	91.0	1.39%	540.8	1.24%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.807e+00	1.0000	266.0	4.07%	1669.8	3.83%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.755e+00	1.0000	2565.0	39.27%	16850.7	38.70%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.749e+00	1.0000	352.0	5.39%	2232.5	5.13%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.747e+00	1.0000	245.0	3.75%	1537.9	3.53%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.721e+00	1.0000	17.0	0.26%	88.3	0.20%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.688e+00	1.0000	636.0	9.74%	4096.5	9.41%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.631e+00	1.0000	138.0	2.11%	853.5	1.96%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.613e+00	1.0000	112.0	1.71%	687.6	1.58%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.587e+00	1.0000	1472.0	22.54%	9626.4	22.11%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.559e+00	1.0000	475.0	7.27%	3053.3	7.01%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.542e+00	1.0000	1203.0	18.42%	7853.7	18.04%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.500e+00	1.0000	846.0	12.95%	5501.9	12.64%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.495e+00	1.0000	222.0	3.40%	1405.6	3.23%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.482e+00	1.0000	1872.0	28.66%	12296.4	28.24%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.468e+00	1.0000	226.0	3.46%	1433.5	3.29%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.436e+00	1.0000	258.0	3.95%	1644.0	3.78%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.401e+00	1.0000	230.0	3.52%	1464.2	3.36%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.389e+00	1.0000	519.0	7.95%	3360.5	7.72%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.376e+00	1.0000	698.0	10.69%	4541.9	10.43%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.375e+00	1.0000	160.0	2.45%	1010.5	2.32%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.355e+00	1.0000	51.0	0.78%	308.3	0.71%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.350e+00	1.0000	293.0	4.49%	1880.7	4.32%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.349e+00	1.0000	603.0	9.23%	3919.0	9.00%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.340e+00	1.0000	1802.0	27.59%	11858.0	27.23%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.309e+00	1.0000	349.0	5.34%	2251.7	5.17%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.308e+00	1.0000	581.0	8.90%	3778.2	8.68%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.304e+00	1.0000	444.0	6.80%	2876.0	6.61%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.272e+00	1.0000	2901.0	44.42%	19182.2	44.05%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.243e+00	1.0000	3658.0	56.01%	24235.3	55.66%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.237e+00	1.0000	462.0	7.07%	3002.9	6.90%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.212e+00	1.0000	201.0	3.08%	1289.6	2.96%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.202e+00	1.0000	99.0	1.52%	624.2	1.43%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.190e+00	1.0000	313.0	4.79%	2026.3	4.65%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.182e+00	1.0000	289.0	4.43%	1869.4	4.29%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.176e+00	1.0000	185.0	2.83%	1187.2	2.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.171e+00	1.0000	308.0	4.72%	1995.4	4.58%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.138e+00	1.0000	489.0	7.49%	3192.7	7.33%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.133e+00	1.0000	739.0	11.32%	4846.1	11.13%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.128e+00	1.0000	871.0	13.34%	5721.2	13.14%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.104e+00	1.0000	1006.0	15.40%	6620.4	15.20%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.085e+00	1.0000	190.0	2.91%	1227.6	2.82%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.059e+00	1.0000	72.0	1.10%	456.5	1.05%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.025e+00	1.0000	820.0	12.56%	5400.9	12.40%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.023e+00	1.0000	643.0	9.85%	4227.2	9.71%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-9.452e-01	1.0000	61.0	0.93%	390.3	0.90%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.311e-01	1.0000	131.0	2.01%	851.5	1.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.259e-01	1.0000	264.0	4.04%	1730.3	3.97%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-9.255e-01	1.0000	644.0	9.86%	4249.3	9.76%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.218e-01	1.0000	94.0	1.44%	608.4	1.40%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.181e-01	1.0000	407.0	6.23%	2678.3	6.15%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-9.145e-01	1.0000	320.0	4.90%	2102.8	4.83%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.123e-01	1.0000	5125.0	78.47%	34109.9	78.34%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-9.105e-01	1.0000	56.0	0.86%	359.8	0.83%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.874e-01	1.0000	870.0	13.32%	5757.7	13.22%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-8.367e-01	1.0000	63.0	0.96%	409.2	0.94%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.337e-01	1.0000	56.0	0.86%	363.5	0.83%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.202e-01	1.0000	707.0	10.83%	4686.8	10.76%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.192e-01	1.0000	381.0	5.83%	2519.8	5.79%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.169e-01	1.0000	118.0	1.81%	774.1	1.78%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.143e-01	1.0000	299.0	4.58%	1975.9	4.54%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.037e-01	1.0000	137.0	2.10%	901.7	2.07%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.025e-01	1.0000	214.0	3.28%	1413.0	3.25%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.976e-01	1.0000	928.0	14.21%	6161.2	14.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.901e-01	1.0000	1693.0	25.92%	11257.8	25.85%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.839e-01	1.0000	1115.0	17.07%	7409.6	17.02%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.609e-01	1.0000	89.0	1.36%	586.2	1.35%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.417e-01	1.0000	534.0	8.18%	3549.5	8.15%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-7.413e-01	1.0000	51.0	0.78%	335.1	0.77%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-7.387e-01	1.0000	3506.0	53.68%	23356.7	53.64%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.366e-01	1.0000	137.0	2.10%	907.3	2.08%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-7.365e-01	1.0000	1021.0	15.63%	6794.0	15.60%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-7.306e-01	1.0000	2184.0	33.44%	14546.5	33.41%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.184e-01	1.0000	665.0	10.18%	4426.9	10.17%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.114e-01	1.0000	354.0	5.42%	2355.3	5.41%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.068e-01	1.0000	166.0	2.54%	1103.1	2.53%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.068e-01	1.0000	499.0	7.64%	3322.8	7.63%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.045e-01	1.0000	542.0	8.30%	3609.0	8.29%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.687e-01	1.0000	1656.0	25.36%	11045.7	25.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.284e-01	1.0000	769.0	11.77%	5139.2	11.80%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.258e-01	1.0000	1972.0	30.19%	13166.1	30.24%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.134e-01	1.0000	209.0	3.20%	1401.7	3.22%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.924e-01	1.0000	280.0	4.29%	1879.5	4.32%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.920e-01	1.0000	364.0	5.57%	2441.5	5.61%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.757e-01	1.0000	746.0	11.42%	4998.0	11.48%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.681e-01	1.0000	449.0	6.87%	3014.7	6.92%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.652e-01	1.0000	1174.0	17.98%	7860.7	18.05%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.610e-01	1.0000	336.0	5.14%	2259.0	5.19%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.609e-01	1.0000	101.0	1.55%	683.1	1.57%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.544e-01	1.0000	1153.0	17.65%	7723.4	17.74%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.519e-01	1.0000	822.0	12.59%	5512.3	12.66%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-5.490e-01	1.0000	2289.0	35.05%	15308.8	35.16%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.440e-01	1.0000	96.0	1.47%	651.1	1.50%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.426e-01	1.0000	3724.0	57.02%	24879.4	57.14%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.411e-01	1.0000	331.0	5.07%	2229.3	5.12%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.244e-01	1.0000	775.0	11.87%	5205.4	11.95%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-5.129e-01	1.0000	154.0	2.36%	1045.1	2.40%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.983e-01	1.0000	55.0	0.84%	378.1	0.87%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.955e-01	1.0000	2037.0	31.19%	13647.9	31.34%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.869e-01	1.0000	19.0	0.29%	133.1	0.31%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.751e-01	1.0000	550.0	8.42%	3711.4	8.52%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.614e-01	1.0000	777.0	11.90%	5236.7	12.03%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.368e-01	1.0000	134.0	2.05%	920.9	2.12%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.329e-01	1.0000	3097.0	47.42%	20747.9	47.65%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.279e-01	1.0000	682.0	10.44%	4609.8	10.59%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.131e-01	1.0000	817.0	12.51%	5519.5	12.68%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.091e-01	1.0000	1073.0	16.43%	7236.6	16.62%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.018e-01	1.0000	371.0	5.68%	2527.0	5.80%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.826e-01	1.0000	941.0	14.41%	6361.7	14.61%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-3.767e-01	1.0000	10.0	0.15%	75.9	0.17%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-3.738e-01	1.0000	129.0	1.98%	895.3	2.06%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.719e-01	1.0000	308.0	4.72%	2108.4	4.84%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.652e-01	1.0000	2171.0	33.24%	14600.2	33.53%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.632e-01	1.0000	2781.0	42.58%	18674.1	42.89%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.506e-01	1.0000	1499.0	22.95%	10113.4	23.23%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.496e-01	1.0000	4539.0	69.50%	30391.1	69.80%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.484e-01	1.0000	32.0	0.49%	232.2	0.53%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.399e-01	1.0000	163.0	2.50%	1132.4	2.60%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.375e-01	1.0000	1223.0	18.73%	8270.8	19.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.371e-01	1.0000	89.0	1.36%	628.0	1.44%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.361e-01	1.0000	97.0	1.49%	682.8	1.57%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.340e-01	1.0000	255.0	3.90%	1758.1	4.04%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-3.295e-01	1.0000	63.0	0.96%	450.0	1.03%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.229e-01	1.0000	337.0	5.16%	2316.2	5.32%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.206e-01	1.0000	1043.0	15.97%	7070.6	16.24%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.178e-01	1.0000	1485.0	22.74%	10035.6	23.05%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.070e-01	1.0000	674.0	10.32%	4595.7	10.55%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.035e-01	1.0000	1737.0	26.60%	11731.0	26.94%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.035e-01	1.0000	1365.0	20.90%	9238.6	21.22%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.889e-01	1.0000	1397.0	21.39%	9460.9	21.73%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.861e-01	1.0000	2758.0	42.23%	18565.8	42.64%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.860e-01	1.0000	93.0	1.42%	662.9	1.52%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.841e-01	1.0000	54.0	0.83%	392.6	0.90%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.829e-01	1.0000	1556.0	23.82%	10529.7	24.18%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.821e-01	1.0000	89.0	1.36%	635.8	1.46%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.819e-01	1.0000	692.0	10.60%	4727.0	10.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.783e-01	1.0000	311.0	4.76%	2152.4	4.94%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.743e-01	1.0000	242.0	3.71%	1684.5	3.87%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.683e-01	1.0000	1577.0	24.15%	10679.0	24.53%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.633e-01	1.0000	555.0	8.50%	3809.4	8.75%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.580e-01	1.0000	41.0	0.63%	304.9	0.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.564e-01	1.0000	852.0	13.05%	5815.5	13.36%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.525e-01	1.0000	1098.0	16.81%	7472.8	17.16%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.392e-01	1.0000	653.0	10.00%	4481.3	10.29%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.384e-01	1.0000	770.0	11.79%	5271.1	12.11%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.329e-01	1.0000	733.0	11.22%	5024.8	11.54%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.259e-01	1.0000	77.0	1.18%	561.3	1.29%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.232e-01	1.0000	211.0	3.23%	1486.7	3.41%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.193e-01	1.0000	962.0	14.73%	6575.3	15.10%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.162e-01	1.0000	182.0	2.79%	1289.6	2.96%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.144e-01	1.0000	178.0	2.73%	1262.6	2.90%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.142e-01	1.0000	734.0	11.24%	5041.0	11.58%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.095e-01	1.0000	28.0	0.43%	217.2	0.50%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-2.016e-01	1.0000	267.0	4.09%	1876.5	4.31%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.010e-01	1.0000	6.0	0.09%	54.8	0.13%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.992e-01	1.0000	415.0	6.35%	2886.0	6.63%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.948e-01	1.0000	633.0	9.69%	4367.2	10.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.937e-01	1.0000	314.0	4.81%	2200.1	5.05%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.869e-01	1.0000	17.0	0.26%	139.5	0.32%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.829e-01	1.0000	1656.0	25.36%	11265.4	25.87%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.786e-01	1.0000	2044.0	31.30%	13871.0	31.86%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.716e-01	1.0000	273.0	4.18%	1928.8	4.43%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.668e-01	1.0000	521.0	7.98%	3622.6	8.32%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.646e-01	1.0000	385.0	5.89%	2697.9	6.20%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.638e-01	1.0000	1232.0	18.86%	8430.9	19.36%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.637e-01	1.0000	989.0	15.14%	6792.2	15.60%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.561e-01	1.0000	1156.0	17.70%	7924.9	18.20%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.460e-01	1.0000	994.0	15.22%	6839.4	15.71%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.448e-01	1.0000	359.0	5.50%	2529.1	5.81%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.370e-01	1.0000	69.0	1.06%	523.2	1.20%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.226e-01	1.0000	1742.0	26.67%	11899.0	27.33%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.172e-01	1.0000	949.0	14.53%	6559.9	15.07%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.148e-01	1.0000	213.0	3.26%	1539.9	3.54%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.110e-01	1.0000	3.0	0.05%	35.8	0.08%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.106e-01	1.0000	1541.0	23.60%	10560.4	24.25%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.086e-01	1.0000	675.0	10.34%	4708.1	10.81%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.445e-02	1.0000	2300.0	35.22%	15677.5	36.01%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.695e-02	1.0000	1099.0	16.83%	7606.1	17.47%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.611e-02	1.0000	949.0	14.53%	6591.6	15.14%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-8.541e-02	1.0000	1370.0	20.98%	9439.2	21.68%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.500e-02	1.0000	274.0	4.20%	1979.1	4.55%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.419e-02	1.0000	3730.0	57.11%	25237.1	57.96%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.337e-02	1.0000	381.0	5.83%	2719.2	6.25%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.275e-02	1.0000	549.0	8.41%	3872.9	8.89%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.047e-02	1.0000	1301.0	19.92%	8980.1	20.62%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.907e-02	1.0000	1309.0	20.04%	9036.6	20.75%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.261e-02	1.0000	944.0	14.45%	6574.5	15.10%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.943e-02	1.0000	781.0	11.96%	5470.2	12.56%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.386e-02	1.0000	283.0	4.33%	2058.3	4.73%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.202e-02	1.0000	5.0	0.08%	59.2	0.14%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.164e-02	1.0000	103.0	1.58%	794.8	1.83%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.070e-02	1.0000	1127.0	17.26%	7833.3	17.99%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.799e-02	1.0000	10.0	0.15%	103.0	0.24%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.620e-02	1.0000	120.0	1.84%	919.3	2.11%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.444e-02	1.0000	1294.0	19.81%	8975.8	20.61%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.189e-02	1.0000	983.0	15.05%	6871.8	15.78%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.187e-02	1.0000	2670.0	40.88%	18233.1	41.87%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.664e-02	1.0000	857.0	13.12%	6023.1	13.83%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.511e-02	1.0000	3426.0	52.46%	23296.7	53.50%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.311e-02	1.0000	213.0	3.26%	1589.9	3.65%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-4.206e-02	1.0000	345.0	5.28%	2513.4	5.77%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.105e-02	1.0000	233.0	3.57%	1732.8	3.98%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.057e-02	1.0000	347.0	5.31%	2529.9	5.81%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.043e-02	1.0000	870.0	13.32%	6124.1	14.06%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.548e-02	1.0000	1304.0	19.97%	9086.6	20.87%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.287e-02	1.0000	1597.0	24.45%	11076.6	25.44%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.087e-02	1.0000	327.0	5.01%	2405.4	5.52%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.597e-02	1.0000	811.0	12.42%	5757.5	13.22%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.597e-02	1.0000	432.0	6.61%	3146.8	7.23%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.050e-02	1.0000	1763.0	26.99%	12245.0	28.12%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.971e-02	1.0000	53.0	0.81%	460.2	1.06%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.761e-02	1.0000	207.0	3.17%	1586.8	3.64%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.339e-02	1.0000	994.0	15.22%	7061.7	16.22%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.171e-02	1.0000	85.0	1.30%	714.6	1.64%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-8.922e-03	1.0000	868.0	13.29%	6227.7	14.30%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.418e-03	1.0000	179.0	2.74%	1423.3	3.27%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.552e-03	1.0000	1500.0	22.97%	10581.5	24.30%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.525e-03	1.0000	1080.0	16.54%	7716.7	17.72%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.784e-03	1.0000	1899.0	29.08%	13343.7	30.65%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.141e-03	1.0000	598.0	9.16%	4443.8	10.21%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.799e-03	1.0000	1720.0	26.34%	12164.3	27.94%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.507e-03	1.0000	186.0	2.85%	1522.4	3.50%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.466e-03	1.0000	1623.0	24.85%	11520.6	26.46%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-6.580e-04	1.0000	333.0	5.10%	2619.1	6.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.440e-04	1.0000	907.0	13.89%	6695.9	15.38%