Information for 10-YCGTTSRAWGAT (Motif 4)


Reverse Opposite:

p-value:1e-15
log p-value:-3.593e+01
Information Content per bp:1.868
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif75.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets211.4 +/- 113.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0070.1_PBX1/Jaspar

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:YCGTTSRAWGAT--
--TTTGATTGATGN

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:YCGTTSRAWGAT---
TAATTCAATGAAGTG

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:YCGTTSRAWGAT--------
---TNNNATGATTTCNNCNN

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:YCGTTSRAWGAT----
ACTATGAATGAATGAT

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---YCGTTSRAWGAT
BRRCVGTTDN-----

PB0006.1_Bcl6b_1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:YCGTTSRAWGAT----
TCTTTCGAGGAATTTG

PB0197.1_Zfp105_2/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-YCGTTSRAWGAT----
ATGGTTCAATAATTTTG

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---YCGTTSRAWGAT
TGTCGGTT-------

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:YCGTTSRAWGAT
--ATTGCATCAK

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.49
Offset:8
Orientation:forward strand
Alignment:YCGTTSRAWGAT----
--------AGATAASR