Information for 18-GGAATCAA (Motif 8)


Reverse Opposite:

p-value:1e-4
log p-value:-9.497e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif75.00%
Number of Background Sequences with motif6756.1
Percentage of Background Sequences with motif2.68%
Average Position of motif in Targets138.2 +/- 91.4bp
Average Position of motif in Background275.5 +/- 353.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCAA----
AAGGCGAAATCATCGCA

PH0166.1_Six6_2/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCAA----
AATAGGGTATCAATATT

PB0059.1_Six6_1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCAA----
AATAGGGTATCATATAT

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCAA----
AATAGGGTATCAATTAT

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGAATCAA---
-TAATCAATTA

PH0161.1_Six1/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCAA----
GATGGGGTATCATTTTT

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGAATCAA
CCWGGAATGY-

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGAATCAA-------
GAAGATCAATCACTAA

MA0151.1_ARID3A/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGAATCAA-
---ATTAAA

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGAATCAA---
-DGATCRATAN