Information for 25-CCCTCTCGAG (Motif 9)


Reverse Opposite:

p-value:1e-3
log p-value:-7.470e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif36.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets438.0 +/- 0.0bp
Average Position of motif in Background257.1 +/- 466.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTCGAG---
ACCACTCTCGGTCAC

GFX(?)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCCTCTCGAG---
-TCTCGCGAGAAT

MA0527.1_ZBTB33/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCCTCTCGAG-----
CTCTCGCGAGATCTG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCCTCTCGAG
RSCACTYRAG

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTCGAG---
GGNTCTCGCGAGAAC

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTCTCGAG-
NNAGTCCCACTCNNNN

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------CCCTCTCGAG--
CNNBRGCGCCCCCTGSTGGC

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCTCTCGAG
AGCCACTCAAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCTCTCGAG
AASCACTCAA-

PB0138.1_Irf4_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTCGAG---
AGTATTCTCGGTTGC