Information for 1-GATCCATTAATG (Motif 1)


Reverse Opposite:

p-value:1e-22
log p-value:-5.136e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets151.1 +/- 111.3bp
Average Position of motif in Background243.0 +/- 74.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GATCCATTAATG
AAAAACCATTAAGG

PH0088.1_Isl2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GATCCATTAATG-
CAAAATCAATTAATTT

PH0080.1_Hoxd8/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GATCCATTAATG-----
NAGCCATTAATTANTTA

PH0041.1_Hmx1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GATCCATTAATG---
ACAAGCAATTAATGAAT

PH0019.1_Dbx2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GATCCATTAATG---
NAATTAATTAATTNNN

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GATCCATTAATG--
NNCATTCATTCATNNN

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GATCCATTAATG
---YCATTAMC-

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GATCCATTAATG
--BCMATTAG--

PH0099.1_Lhx9/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GATCCATTAATG--
NGTNATTAATTAATGNG

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GATCCATTAATG---
GACNTCATTAATAANN