Information for 13-CACACACACACA (Motif 16)


Reverse Opposite:

p-value:1e-6
log p-value:-1.486e+01
Information Content per bp:1.826
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif9.33%
Number of Background Sequences with motif2143.2
Percentage of Background Sequences with motif4.40%
Average Position of motif in Targets172.0 +/- 114.9bp
Average Position of motif in Background215.6 +/- 160.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----CACACACACACA
AGCGGCACACACGCAA-

MA0472.1_EGR2/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CACACACACACA
CCCCCGCCCACGCAC-

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CACACACACACA
CRCCCACGCA--

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACACACACACA
GCCACACCCA----

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CACACACACACA
GGCCACACCCAN---

MA0493.1_Klf1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CACACACACACA
GGCCACACCCA----

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CACACACACACA
YCCGCCCACGCN--

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CACACACACACA
CGAAGCACACAAAATA-

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CACACACACACA
CAAACCACAAACCCC--

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACACACACACA
--CACGCA----