Information for 2-AATTATTGCCTT (Motif 2)


Reverse Opposite:

p-value:1e-17
log p-value:-4.134e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets155.0 +/- 102.4bp
Average Position of motif in Background259.4 +/- 122.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AATTATTGCCTT
AATTATT-----

MA0075.1_Prrx2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AATTATTGCCTT
AATTA-------

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AATTATTGCCTT-
NAATTTTATTACCNNN

PH0080.1_Hoxd8/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AATTATTGCCTT
TAAATAATTAATGGCTA

PH0022.1_Dlx3/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AATTATTGCCTT
NNNGGTAATTATNGNGN-

PH0023.1_Dlx4/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AATTATTGCCTT
GTCGGTAATTATNGNGN-

MA0158.1_HOXA5/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AATTATTGCCTT
AATTAGTG----

PH0062.1_Hoxb7/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AATTATTGCCTT
GTAGTAATTAATGCAA-

PH0021.1_Dlx2/Jaspar

Match Rank:9
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------AATTATTGCCTT
CTGANNTAATTATNNN---

PH0106.1_Msx1/Jaspar

Match Rank:10
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------AATTATTGCCTT
TGCAACTAATTAATTC---