Information for 8-AACTCAAC (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.244e+01
Information Content per bp:1.935
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.52%
Number of Background Sequences with motif511.2
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets257.4 +/- 92.4bp
Average Position of motif in Background210.1 +/- 123.3bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AACTCAAC
AGCCACTCAAG

MA0133.1_BRCA1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AACTCAAC--
---ACAACAC

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AACTCAAC-
AAATAAACA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AACTCAAC
RSCACTYRAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AACTCAAC
AASCACTCAA-

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AACTCAAC-
AAAGTAAACA

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AACTCAAC------
AACACCAAAACAAAGGA

MA0040.1_Foxq1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AACTCAAC----
-AATAAACAATN

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AACTCAAC-
AAAGTAAACA

MA0047.2_Foxa2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AACTCAAC-
NCTAAGTAAACA