Information for 13-CATGGGTC (Motif 23)


Reverse Opposite:

p-value:1e-3
log p-value:-8.395e+00
Information Content per bp:1.948
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif4.05%
Number of Background Sequences with motif850.8
Percentage of Background Sequences with motif1.75%
Average Position of motif in Targets196.6 +/- 114.5bp
Average Position of motif in Background217.0 +/- 129.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.39
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CATGGGTC------
GGCGAGGGGTCAAGGGC

MA0058.2_MAX/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CATGGGTC-
CCATGTGCTT

MA0491.1_JUND/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CATGGGTC---
NATGAGTCACN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CATGGGTC-
---AGGTCA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CATGGGTC------
CTCCAGGGGTCAATTGA

MA0476.1_FOS/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CATGGGTC---
NATGAGTCANN

MA0147.2_Myc/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGGTC
AAGCACATGG---

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CATGGGTC
RTCATGTGAC

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CATGGGTC--
CSTGGGAAAD

MA0526.1_USF2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CATGGGTC-
GTCATGTGACC