Information for 23-TGGGCTGGTCAG (Motif 26)


Reverse Opposite:

p-value:1e-2
log p-value:-6.417e+00
Information Content per bp:1.960
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets218.0 +/- 115.3bp
Average Position of motif in Background192.4 +/- 85.3bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)8.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGGCTGGTCAG---
CGCGCCGGGTCACGTA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGGGCTGGTCAG
-----AGGTCA-

PB0098.1_Zfp410_1/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TGGGCTGGTCAG
TATTATGGGATGGATAA

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGGGCTGGTCAG
--NGCTN-----

MA0596.1_SREBF2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGGCTGGTCAG
ATGGGGTGAT---

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGGCTGGTCAG
CGTGGGTGGTCC-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGGCTGGTCAG
TWGTCTGV----

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGGGCTGGTCAG---
----CAGGTAAGTAT

MA0595.1_SREBF1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGGCTGGTCAG
GTGGGGTGAT---

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGGGCTGGTCAG
DGGGYGKGGC--