Information for 25-GCAGGGGCCATC (Motif 28)


Reverse Opposite:

p-value:1e-1
log p-value:-3.370e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets225.1 +/- 116.5bp
Average Position of motif in Background251.9 +/- 72.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)9.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGGCCATC---
GGCGAGGGGTCAAGGGC

MA0155.1_INSM1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGGCCATC
TGTCAGGGGGCG--

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGGCCATC---
CTCCAGGGGTCAATTGA

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGGCCATC
NNCAGGTGNN---

MA0095.2_YY1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCAGGGGCCATC---
---GCNGCCATCTTG

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCAGGGGCCATC---
-----GGCCATTAAC

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGGGCCATC---
NTNNNGGGGTCANGNNN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGGCCATC-
ATCCACAGGTGCGAAAA

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGGCCATC
CACAGCAGGGGG----

MA0512.1_Rxra/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCAGGGGCCATC
-CAAAGGTCAGA