Information for 25-TGGCTGGC (Motif 29)


Reverse Opposite:

p-value:1e0
log p-value:-8.203e-01
Information Content per bp:1.530
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif1042.0
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets222.5 +/- 118.6bp
Average Position of motif in Background212.0 +/- 123.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)8.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGC
TWGTCTGV-

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTGGC-----
NGTAGGTTGGCATNNN

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCTGGC----
NNTNNTGTCTGGNNTNG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGC
CTGTCTGG-

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGGCTGGC
-NGCTN--

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGGCTGGC-
---TTGGCA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGGCTGGC--
GGTCTGGCAT

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGC----
CTGTCTGTCACCT

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGGCTGGC----
TGTCTGDCACCT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGGCTGGC
VBSYGTCTGG-