Information for 3-TGCCCTCAGGAC (Motif 3)


Reverse Opposite:

p-value:1e-16
log p-value:-3.721e+01
Information Content per bp:1.892
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets232.0 +/- 118.8bp
Average Position of motif in Background207.1 +/- 128.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCCCTCAGGAC
ATGCCCTGAGGC-

MA0003.2_TFAP2A/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCAGGAC---
TGCCCTGAGGCANTN

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCAGGAC
WTGSCCTSAGGS-

MA0524.1_TFAP2C/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGCCCTCAGGAC-
CATGGCCCCAGGGCA

MA0512.1_Rxra/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGCCCTCAGGAC
NCTGACCTTTG---

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCAGGAC-
NTGCCCANNGGTNA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCAGGAC
CTGACCTTTG---

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCAGGAC-
NTGCCCTAGGGCAA

MA0597.1_THAP1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCCCTCAGGAC
CTGCCCGCA----

MA0160.1_NR4A2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCAGGAC
GTGACCTT-----