Information for 2-AGGACACTCT (Motif 4)


Reverse Opposite:

p-value:1e-12
log p-value:-2.882e+01
Information Content per bp:1.974
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif56.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets251.8 +/- 106.8bp
Average Position of motif in Background220.9 +/- 125.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0160.1_NR4A2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGACACTCT
AAGGTCAC---

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGACACTCT----
VAGRACAKWCTGTYC

MA0113.2_NR3C1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGACACTCT-----
AGNACATTNTGTTCT

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGACACTCT---
AGCGGCACACACGCAA

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGACACTCT----
VAGRACAKNCTGTBC

MA0007.2_AR/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGACACTCT----
AAGAACAGAATGTTC

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGGACACTCT-----
NAGAACAGNCTGTNCT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGACACTCT
AGGTCA----

MA0112.2_ESR1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AGGACACTCT-----
GGCCCAGGTCACCCTGACCT

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGGACACTCT
TCAAGGTCAN---