Information for 4-AGAGAGAGAGAG (Motif 5)


Reverse Opposite:

p-value:1e-12
log p-value:-2.864e+01
Information Content per bp:1.903
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif6.69%
Number of Background Sequences with motif780.8
Percentage of Background Sequences with motif1.60%
Average Position of motif in Targets242.3 +/- 89.8bp
Average Position of motif in Background203.7 +/- 122.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0508.1_PRDM1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAGAG---
AGAAAGTGAAAGTGA

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAGAGAG-
-GAAAGTGAAAGT

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGAGAGAG--
NNNACCGAGAGTNNN

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGAGAGAGAGAG-
-GAAAGTGAAAGT

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAGAGAGAGAG----
-TTGACCGAGAATTCC

MA0050.2_IRF1/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AGAGAGAGAGAG-----
AAANNGAAAGTGAAAGTAAAN

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGAGAGAG
AGGTGNCAGACAG

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAGAGAG-
-GAAACTGAAACT

MA0051.1_IRF2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAGAG------
GGAAAGCGAAACCAAAAC

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAGAG----
AAACAGACAAAGGAAT