Information for 5-GATCATGAAA (Motif 7)


Reverse Opposite:

p-value:1e-10
log p-value:-2.483e+01
Information Content per bp:1.979
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif61.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets255.9 +/- 117.4bp
Average Position of motif in Background210.6 +/- 126.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GATCATGAAA-
-ATGATGCAAT

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GATCATGAAA-
-MTGATGCAAT

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GATCATGAAA---
TAAGGTAATAAAATTA

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GATCATGAAA---
GGAGGTCATTAATTAT

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GATCATGAAA--
NNTNTCATGAATGT

MA0151.1_ARID3A/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GATCATGAAA
----ATTAAA

MA0466.1_CEBPB/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GATCATGAAA--
-ATTGTGCAATA

MA0102.3_CEBPA/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GATCATGAAA-
NATTGTGCAAT

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GATCATGAAA-----
ACGGCCATAAAATTAAT

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GATCATGAAA---
AAAGGTAATAAAATTT