Information for 6-AAAGTAAAGA (Motif 9)


Reverse Opposite:

p-value:1e-9
log p-value:-2.235e+01
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif116.9
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets219.5 +/- 158.8bp
Average Position of motif in Background241.7 +/- 115.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:AAAGTAAAGA
AAAGTAAACA

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AAAGTAAAGA
AAAGTAAACA

MA0148.3_FOXA1/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTAAAGA----
CAAAGTAAACANNNN

MA0047.2_Foxa2/Jaspar

Match Rank:4
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AAAGTAAAGA
NCTAAGTAAACA

PB0015.1_Foxa2_1/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AAAGTAAAGA-----
AAAAAGTAAACAAAGAC

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AAAGTAAAGA--
TATGTAAACANG

MA0481.1_FOXP1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AAAGTAAAGA---
CAAAAGTAAACAAAG

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AAAGTAAAGA
-AAATAAACA

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AAAGTAAAGA-----
AAAAAGTAAACAAACAC

MA0593.1_FOXP2/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AAAGTAAAGA--
-AAGTAAACAAA