Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 568)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48675)	% of Background Sequences with Motif
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-7.432e+00	0.1562	36.0	6.34%	1708.5	3.51%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.311e+00	0.6517	28.0	4.93%	1405.2	2.89%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-4.450e+00	1.0000	131.0	23.06%	9331.8	19.16%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.286e+00	1.0000	14.0	2.46%	698.5	1.43%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.144e+00	1.0000	117.0	20.60%	8633.6	17.73%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.968e+00	1.0000	3.0	0.53%	71.5	0.15%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.949e+00	1.0000	78.0	13.73%	5573.4	11.44%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.780e+00	1.0000	12.0	2.11%	618.8	1.27%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.484e+00	1.0000	50.0	8.80%	3504.0	7.19%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-2.446e+00	1.0000	6.0	1.06%	260.9	0.54%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.416e+00	1.0000	345.0	60.74%	28183.6	57.87%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.335e+00	1.0000	143.0	25.18%	11099.7	22.79%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.328e+00	1.0000	22.0	3.87%	1394.3	2.86%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.291e+00	1.0000	63.0	11.09%	4591.9	9.43%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.203e+00	1.0000	294.0	51.76%	23915.7	49.11%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.177e+00	1.0000	106.0	18.66%	8121.2	16.68%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.143e+00	1.0000	72.0	12.68%	5367.0	11.02%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.876e+00	1.0000	82.0	14.44%	6287.6	12.91%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.856e+00	1.0000	14.0	2.46%	883.8	1.81%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.851e+00	1.0000	44.0	7.75%	3219.3	6.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.742e+00	1.0000	24.0	4.23%	1671.0	3.43%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.735e+00	1.0000	118.0	20.77%	9329.2	19.16%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.614e+00	1.0000	43.0	7.57%	3219.2	6.61%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.550e+00	1.0000	96.0	16.90%	7600.3	15.61%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.461e+00	1.0000	14.0	2.46%	957.6	1.97%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.461e+00	1.0000	251.0	44.19%	20740.2	42.59%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.451e+00	1.0000	27.0	4.75%	1986.8	4.08%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.443e+00	1.0000	50.0	8.80%	3854.4	7.91%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.431e+00	1.0000	343.0	60.39%	28652.7	58.83%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.419e+00	1.0000	34.0	5.99%	2560.0	5.26%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.416e+00	1.0000	70.0	12.32%	5513.2	11.32%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.416e+00	1.0000	110.0	19.37%	8844.0	18.16%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.399e+00	1.0000	78.0	13.73%	6185.4	12.70%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.348e+00	1.0000	21.0	3.70%	1536.7	3.16%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.275e+00	1.0000	148.0	26.06%	12135.0	24.92%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.272e+00	1.0000	47.0	8.27%	3681.6	7.56%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.264e+00	1.0000	2.0	0.35%	90.3	0.19%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.263e+00	1.0000	121.0	21.30%	9866.6	20.26%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.247e+00	1.0000	15.0	2.64%	1084.8	2.23%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.237e+00	1.0000	56.0	9.86%	4442.2	9.12%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.214e+00	1.0000	42.0	7.39%	3294.1	6.76%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.193e+00	1.0000	26.0	4.58%	1988.7	4.08%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.157e+00	1.0000	110.0	19.37%	9012.2	18.50%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.155e+00	1.0000	20.0	3.52%	1512.4	3.11%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.134e+00	1.0000	13.0	2.29%	952.7	1.96%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.105e+00	1.0000	28.0	4.93%	2184.2	4.48%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.098e+00	1.0000	149.0	26.23%	12356.8	25.37%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.090e+00	1.0000	10.0	1.76%	722.7	1.48%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.083e+00	1.0000	106.0	18.66%	8727.5	17.92%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.082e+00	1.0000	4.0	0.70%	252.1	0.52%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.075e+00	1.0000	13.0	2.29%	967.7	1.99%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.073e+00	1.0000	70.0	12.32%	5701.9	11.71%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.054e+00	1.0000	8.0	1.41%	570.9	1.17%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.026e+00	1.0000	95.0	16.73%	7839.4	16.10%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.023e+00	1.0000	3.0	0.53%	183.5	0.38%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.021e+00	1.0000	9.0	1.58%	657.2	1.35%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.007e+00	1.0000	79.0	13.91%	6501.6	13.35%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-9.525e-01	1.0000	209.0	36.80%	17596.3	36.13%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.516e-01	1.0000	30.0	5.28%	2413.5	4.96%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.348e-01	1.0000	78.0	13.73%	6466.3	13.28%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-9.254e-01	1.0000	5.0	0.88%	354.9	0.73%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-8.921e-01	1.0000	22.0	3.87%	1769.9	3.63%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.313e-01	1.0000	1.0	0.18%	49.9	0.10%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.134e-01	1.0000	139.0	24.47%	11758.9	24.14%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.063e-01	1.0000	90.0	15.85%	7584.4	15.57%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-7.901e-01	1.0000	55.0	9.68%	4615.5	9.48%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.880e-01	1.0000	98.0	17.25%	8282.2	17.01%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-7.629e-01	1.0000	6.0	1.06%	469.3	0.96%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.561e-01	1.0000	20.0	3.52%	1657.3	3.40%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.516e-01	1.0000	142.0	25.00%	12077.1	24.80%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.238e-01	1.0000	167.0	29.40%	14247.6	29.25%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.059e-01	1.0000	21.0	3.70%	1765.4	3.62%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.049e-01	1.0000	34.0	5.99%	2878.0	5.91%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.684e-01	1.0000	64.0	11.27%	5476.4	11.24%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.647e-01	1.0000	65.0	11.44%	5565.3	11.43%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.635e-01	1.0000	446.0	78.52%	38222.8	78.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.580e-01	1.0000	4.0	0.70%	322.8	0.66%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.578e-01	1.0000	18.0	3.17%	1530.3	3.14%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.392e-01	1.0000	171.0	30.11%	14690.3	30.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.304e-01	1.0000	362.0	63.73%	31072.9	63.80%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.155e-01	1.0000	15.0	2.64%	1290.3	2.65%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.118e-01	1.0000	188.0	33.10%	16184.9	33.23%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.038e-01	1.0000	22.0	3.87%	1903.0	3.91%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.007e-01	1.0000	10.0	1.76%	861.0	1.77%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.867e-01	1.0000	192.0	33.80%	16562.0	34.01%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.794e-01	1.0000	46.0	8.10%	3998.9	8.21%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.736e-01	1.0000	17.0	2.99%	1484.6	3.05%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.669e-01	1.0000	29.0	5.11%	2533.3	5.20%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.635e-01	1.0000	51.0	8.98%	4444.6	9.13%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.572e-01	1.0000	81.0	14.26%	7044.1	14.46%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-5.532e-01	1.0000	37.0	6.51%	3238.6	6.65%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.526e-01	1.0000	49.0	8.63%	4280.7	8.79%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.390e-01	1.0000	80.0	14.08%	6977.4	14.33%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-5.263e-01	1.0000	41.0	7.22%	3607.5	7.41%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-5.165e-01	1.0000	36.0	6.34%	3179.2	6.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.164e-01	1.0000	63.0	11.09%	5529.0	11.35%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-5.136e-01	1.0000	54.0	9.51%	4749.1	9.75%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.020e-01	1.0000	35.0	6.16%	3103.9	6.37%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-4.916e-01	1.0000	2.0	0.35%	177.2	0.36%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.845e-01	1.0000	131.0	23.06%	11452.9	23.52%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.808e-01	1.0000	23.0	4.05%	2066.0	4.24%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.775e-01	1.0000	34.0	5.99%	3035.8	6.23%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.678e-01	1.0000	49.0	8.63%	4357.1	8.95%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.667e-01	1.0000	206.0	36.27%	17943.1	36.84%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.652e-01	1.0000	39.0	6.87%	3484.9	7.16%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.581e-01	1.0000	22.0	3.87%	1992.0	4.09%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.463e-01	1.0000	34.0	5.99%	3061.6	6.29%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.432e-01	1.0000	1.0	0.18%	88.6	0.18%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.417e-01	1.0000	62.0	10.92%	5520.9	11.34%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.393e-01	1.0000	154.0	27.11%	13506.1	27.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-4.376e-01	1.0000	27.0	4.75%	2450.1	5.03%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.345e-01	1.0000	57.0	10.04%	5091.9	10.46%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.307e-01	1.0000	28.0	4.93%	2544.0	5.22%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-4.164e-01	1.0000	36.0	6.34%	3264.5	6.70%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.091e-01	1.0000	126.0	22.18%	11131.5	22.86%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-4.050e-01	1.0000	92.0	16.20%	8183.4	16.80%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.043e-01	1.0000	57.0	10.04%	5125.5	10.52%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.982e-01	1.0000	58.0	10.21%	5220.6	10.72%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.839e-01	1.0000	7.0	1.23%	681.8	1.40%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.835e-01	1.0000	1.0	0.18%	98.3	0.20%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.831e-01	1.0000	14.0	2.46%	1325.3	2.72%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.751e-01	1.0000	183.0	32.22%	16121.5	33.10%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.668e-01	1.0000	85.0	14.96%	7627.3	15.66%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.587e-01	1.0000	8.0	1.41%	787.4	1.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-3.559e-01	1.0000	6.0	1.06%	600.9	1.23%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.554e-01	1.0000	3.0	0.53%	310.5	0.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.512e-01	1.0000	47.0	8.27%	4306.4	8.84%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.467e-01	1.0000	21.0	3.70%	1987.2	4.08%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.390e-01	1.0000	5.0	0.88%	512.5	1.05%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.370e-01	1.0000	202.0	35.56%	17836.5	36.62%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.231e-01	1.0000	6.0	1.06%	616.5	1.27%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.191e-01	1.0000	73.0	12.85%	6647.0	13.65%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.162e-01	1.0000	89.0	15.67%	8057.9	16.55%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.138e-01	1.0000	12.0	2.11%	1188.0	2.44%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.113e-01	1.0000	18.0	3.17%	1744.0	3.58%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.090e-01	1.0000	178.0	31.34%	15821.1	32.49%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.032e-01	1.0000	25.0	4.40%	2390.5	4.91%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.031e-01	1.0000	5.0	0.88%	529.8	1.09%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.012e-01	1.0000	4.0	0.70%	432.0	0.89%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.871e-01	1.0000	69.0	12.15%	6344.8	13.03%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.820e-01	1.0000	65.0	11.44%	5998.1	12.32%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.801e-01	1.0000	125.0	22.01%	11276.5	23.15%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.740e-01	1.0000	25.0	4.40%	2421.5	4.97%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.571e-01	1.0000	137.0	24.12%	12374.1	25.41%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.334e-01	1.0000	16.0	2.82%	1632.1	3.35%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.316e-01	1.0000	40.0	7.04%	3841.9	7.89%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.296e-01	1.0000	17.0	2.99%	1730.9	3.55%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.262e-01	1.0000	24.0	4.23%	2386.7	4.90%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.212e-01	1.0000	4.0	0.70%	473.8	0.97%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.178e-01	1.0000	31.0	5.46%	3042.6	6.25%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.132e-01	1.0000	4.0	0.70%	478.8	0.98%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.096e-01	1.0000	19.0	3.35%	1941.9	3.99%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.025e-01	1.0000	30.0	5.28%	2973.0	6.10%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.022e-01	1.0000	60.0	10.56%	5697.5	11.70%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.002e-01	1.0000	87.0	15.32%	8111.1	16.65%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.000e-01	1.0000	31.0	5.46%	3069.0	6.30%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.931e-01	1.0000	35.0	6.16%	3448.7	7.08%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.918e-01	1.0000	22.0	3.87%	2247.0	4.61%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.852e-01	1.0000	222.0	39.08%	19955.1	40.97%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.848e-01	1.0000	70.0	12.32%	6632.0	13.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.813e-01	1.0000	3.0	0.53%	391.2	0.80%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.794e-01	1.0000	98.0	17.25%	9140.2	18.77%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.753e-01	1.0000	58.0	10.21%	5575.6	11.45%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.744e-01	1.0000	97.0	17.08%	9065.7	18.61%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.690e-01	1.0000	45.0	7.92%	4409.2	9.05%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.676e-01	1.0000	101.0	17.78%	9439.2	19.38%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.657e-01	1.0000	10.0	1.76%	1128.2	2.32%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.655e-01	1.0000	77.0	13.56%	7307.6	15.00%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.626e-01	1.0000	8.0	1.41%	931.9	1.91%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.616e-01	1.0000	29.0	5.11%	2949.3	6.06%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.607e-01	1.0000	14.0	2.46%	1527.9	3.14%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.565e-01	1.0000	54.0	9.51%	5257.7	10.80%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.458e-01	1.0000	25.0	4.40%	2603.7	5.35%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.389e-01	1.0000	16.0	2.82%	1754.8	3.60%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.380e-01	1.0000	177.0	31.16%	16222.7	33.31%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.312e-01	1.0000	5.0	0.88%	652.6	1.34%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.284e-01	1.0000	167.0	29.40%	15388.1	31.60%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.259e-01	1.0000	8.0	1.41%	975.2	2.00%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.237e-01	1.0000	37.0	6.51%	3776.3	7.75%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.227e-01	1.0000	18.0	3.17%	1977.7	4.06%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.163e-01	1.0000	84.0	14.79%	8088.4	16.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.133e-01	1.0000	57.0	10.04%	5651.7	11.60%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.109e-01	1.0000	3.0	0.53%	450.0	0.92%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.026e-01	1.0000	81.0	14.26%	7870.3	16.16%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.016e-01	1.0000	1.0	0.18%	200.7	0.41%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.015e-01	1.0000	40.0	7.04%	4118.6	8.46%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-9.756e-02	1.0000	148.0	26.06%	13862.6	28.46%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-9.331e-02	1.0000	2.0	0.35%	345.9	0.71%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-9.127e-02	1.0000	64.0	11.27%	6371.2	13.08%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-8.968e-02	1.0000	153.0	26.94%	14344.4	29.45%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.887e-02	1.0000	60.0	10.56%	6014.8	12.35%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-8.571e-02	1.0000	3.0	0.53%	479.5	0.98%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.002e-02	1.0000	52.0	9.15%	5312.6	10.91%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.359e-02	1.0000	105.0	18.49%	10171.0	20.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.313e-02	1.0000	27.0	4.75%	2977.1	6.11%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.301e-02	1.0000	80.0	14.08%	7915.3	16.25%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.293e-02	1.0000	4.0	0.70%	618.3	1.27%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.074e-02	1.0000	5.0	0.88%	738.5	1.52%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.996e-02	1.0000	38.0	6.69%	4042.4	8.30%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.891e-02	1.0000	10.0	1.76%	1288.9	2.65%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.738e-02	1.0000	242.0	42.61%	22245.6	45.68%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.907e-02	1.0000	7.0	1.23%	989.6	2.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.702e-02	1.0000	6.0	1.06%	882.5	1.81%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.257e-02	1.0000	4.0	0.70%	659.2	1.35%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.155e-02	1.0000	232.0	40.85%	21513.1	44.17%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.130e-02	1.0000	115.0	20.25%	11219.8	23.04%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.114e-02	1.0000	263.0	46.30%	24189.8	49.67%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.101e-02	1.0000	129.0	22.71%	12475.9	25.62%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.080e-02	1.0000	18.0	3.17%	2172.3	4.46%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.836e-02	1.0000	125.0	22.01%	12140.2	24.93%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.600e-02	1.0000	119.0	20.95%	11623.2	23.87%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.523e-02	1.0000	5.0	0.88%	798.5	1.64%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.523e-02	1.0000	5.0	0.88%	798.5	1.64%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.463e-02	1.0000	22.0	3.87%	2603.8	5.35%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-4.345e-02	1.0000	65.0	11.44%	6723.9	13.81%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-4.247e-02	1.0000	24.0	4.23%	2814.3	5.78%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.196e-02	1.0000	127.0	22.36%	12378.6	25.42%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.819e-02	1.0000	3.0	0.53%	571.3	1.17%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.780e-02	1.0000	162.0	28.52%	15536.8	31.90%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.751e-02	1.0000	3.0	0.53%	573.3	1.18%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.589e-02	1.0000	45.0	7.92%	4900.8	10.06%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.589e-02	1.0000	45.0	7.92%	4901.0	10.06%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.546e-02	1.0000	96.0	16.90%	9645.9	19.81%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.383e-02	1.0000	13.0	2.29%	1732.2	3.56%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.299e-02	1.0000	24.0	4.23%	2872.0	5.90%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.220e-02	1.0000	178.0	31.34%	17017.3	34.94%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.061e-02	1.0000	2.0	0.35%	457.9	0.94%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.040e-02	1.0000	19.0	3.35%	2380.5	4.89%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.955e-02	1.0000	25.0	4.40%	2996.2	6.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.884e-02	1.0000	38.0	6.69%	4285.8	8.80%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.410e-02	1.0000	370.0	65.14%	33571.0	68.93%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.394e-02	1.0000	59.0	10.39%	6348.3	13.03%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.204e-02	1.0000	152.0	26.76%	14871.9	30.54%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.105e-02	1.0000	99.0	17.43%	10106.2	20.75%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.062e-02	1.0000	42.0	7.39%	4761.7	9.78%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.807e-02	1.0000	5.0	0.88%	916.6	1.88%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.730e-02	1.0000	73.0	12.85%	7764.2	15.94%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.623e-02	1.0000	81.0	14.26%	8531.2	17.52%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.584e-02	1.0000	43.0	7.57%	4927.0	10.12%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.415e-02	1.0000	26.0	4.58%	3257.4	6.69%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.313e-02	1.0000	320.0	56.34%	29625.5	60.83%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.030e-02	1.0000	265.0	46.65%	25046.4	51.43%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-9.800e-03	1.0000	66.0	11.62%	7270.8	14.93%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.847e-03	1.0000	58.0	10.21%	6532.5	13.41%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-8.751e-03	1.0000	101.0	17.78%	10581.6	21.73%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.641e-03	1.0000	27.0	4.75%	3487.6	7.16%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-7.402e-03	1.0000	267.0	47.01%	25341.7	52.03%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.902e-03	1.0000	64.0	11.27%	7175.4	14.73%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.774e-03	1.0000	8.0	1.41%	1437.5	2.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.408e-03	1.0000	18.0	3.17%	2595.5	5.33%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.594e-03	1.0000	144.0	25.35%	14793.0	30.37%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.698e-03	1.0000	26.0	4.58%	3583.3	7.36%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.642e-03	1.0000	72.0	12.68%	8195.9	16.83%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.120e-03	1.0000	129.0	22.71%	13775.4	28.28%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-9.300e-04	1.0000	118.0	20.77%	12811.7	26.31%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.810e-04	1.0000	39.0	6.87%	5163.8	10.60%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.380e-04	1.0000	287.0	50.53%	27758.1	56.99%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.510e-04	1.0000	117.0	20.60%	12776.7	26.23%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.810e-04	1.0000	8.0	1.41%	1712.9	3.52%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.690e-04	1.0000	81.0	14.26%	9487.8	19.48%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.170e-04	1.0000	67.0	11.80%	8207.5	16.85%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.200e-05	1.0000	53.0	9.33%	7246.6	14.88%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.800e-05	1.0000	107.0	18.84%	12718.8	26.12%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.500e-05	1.0000	60.0	10.56%	8103.5	16.64%