Information for 11-CGTCACCCGA (Motif 12)


Reverse Opposite:

p-value:1e-2
log p-value:-6.764e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.76%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets329.0 +/- 0.0bp
Average Position of motif in Background176.9 +/- 67.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0595.1_SREBF1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CGTCACCCGA-
-ATCACCCCAC

MA0596.1_SREBF2/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGTCACCCGA-
-ATCACCCCAT

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CGTCACCCGA-
-ATCACCCCAT

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CGTCACCCGA-
-GTCACATGAY

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGTCACCCGA-
CNGTCACGCCAC

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CGTCACCCGA
ACGTCA-----

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CGTCACCCGA----
NNNNTGACCCGGCGCG

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGTCACCCGA----
NNCNTGACCCCGCTCT

PB0108.1_Atf1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CGTCACCCGA
NTTATTCGTCATNC--

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGTCACCCGA---
GTGCCACGCGACTG