Information for 9-CTGCAYCTGRCA (Motif 17)


Reverse Opposite:

p-value:1e-2
log p-value:-6.072e+00
Information Content per bp:1.923
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.76%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets127.0 +/- 0.0bp
Average Position of motif in Background227.5 +/- 213.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTGCAYCTGRCA-
-NVCAGCTGBBNN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAYCTGRCA--
NNTNCGCACCTGTNGAN

MA0522.1_Tcf3/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTGCAYCTGRCA
NTGCAGCTGTG-

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTGCAYCTGRCA
-NNCACCTGNN-

MA0500.1_Myog/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGCAYCTGRCA
NNGCAGCTGTC-

MA0100.2_Myb/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGCAYCTGRCA
--CCAACTGCCA

MA0499.1_Myod1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTGCAYCTGRCA--
-TGCAGCTGTCCCT

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGCAYCTGRCA
NNGCAGCTGTT-

MA0464.1_Bhlhe40/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGCAYCTGRCA
NTGCACGTGAG-

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTGCAYCTGRCA--
----VGCTGWCAVB